Python实现GB格式序列文件转换Fasta格式文件_python_

LOCUS NM_213806 849 bp mRNA linear MAM 24-SEP-2019 DEFINITION Sus scrofa Fas ligand (TNF superfamily, member 6) (FASLG), mRNA. ACCESSION NM_213806 VERSION NM_213806.1 KEYWORDS RefSeq. SOURCE Sus scrofa (pig) ORGANISM Sus scrofa Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus. REFERENCE 1 (bases 1 to 849) AUTHORS Lin F, Fu YH, Han J, Shen M, Du CW, Li R, Ma XS and Liu HL. TITLE Changes in the expression of Fox O1 and death ligand genes during follicular atresia in porcine ovary JOURNAL Genet. Mol. Res. 13 (3), 6638-6645 (2014) PUBMED 25177944 REMARK GeneRIF: Data suggest forkhead box protein O1 (FoxO1) involvement in the regulation of TNF-related apoptosis-inducing ligand TRAIL and Fas ligand FasL expression during follicular atresia. Publication Status: Online-Only REFERENCE 2 (bases 1 to 849) AUTHORS Xie GH, Wang SJ, Wang Y, Zhang Y, Zhang HZ, Jin S, Wang QF, Liu ZC and Ge HL. TITLE Fas Ligand gene transfer enhances the survival of tissue-engineered chondrocyte allografts in mini-pigs JOURNAL Transpl. Immunol. 19 (2), 145-151 (2008) PUBMED 18503890 REMARK GeneRIF: the result indicates that the expression of FasL by chondrocytes is capable of inducing apoptosis of activated T cells REFERENCE 3 (bases 1 to 849) AUTHORS Chang HW, Jeng CR, Lin CM, Liu JJ, Chang CC, Tsai YC, Chia MY and Pang VF. TITLE The involvement of Fas/FasL interaction in porcine circovirus type 2 and porcine reproductive and respiratory syndrome virus co-inoculation-associated lymphocyte apoptosis in vitro JOURNAL Vet. Microbiol. 122 (1-2), 72-82 (2007) PUBMED 17321702 REMARK GeneRIF: The expression of FAS and FAS ligand in splenic macrophages co-infected with porcine circovirus 2 and porcine reproductive and respiratory syndrome virus is reported REFERENCE 4 (bases 1 to 849) AUTHORS Tayade C, Black GP, Fang Y and Croy BA. TITLE Differential gene expression in endometrium, endometrial lymphocytes, and trophoblasts during successful and abortive embryo implantation JOURNAL J. Immunol. 176 (1), 148-156 (2006) PUBMED 16365405 REFERENCE 5 (bases 1 to 849) AUTHORS Bai L, Maedler K, Donath M and Tuch BE. TITLE Expression of Fas but not Fas ligand on fetal pig beta cells JOURNAL Xenotransplantation 11 (5), 426-435 (2004) PUBMED 15303979 REMARK GeneRIF: FasL was not detected on fetal pig pancreatic cells but could be induced on both beta and non-beta cells when the cells were treated with IL1beta. Erratum:[Xenotransplantation. 2016 Mar;23(2):171-2. PMID: 27106874] REFERENCE 6 (bases 1 to 849) AUTHORS Tsuyuki S, Kono M and Bloom ET. TITLE Cloning and potential utility of porcine Fas ligand: overexpression in porcine endothelial cells protects them from attack by human cytolytic cells JOURNAL Xenotransplantation 9 (6), 410-421 (2002) PUBMED 12371937 REFERENCE 7 (bases 1 to 849) AUTHORS Motegi-Ishiyama Y, Nakajima Y, Hoka S and Takagaki Y. TITLE Porcine Fas-ligand gene: genomic sequence analysis and comparison with human gene JOURNAL Mol. Immunol. 38 (8), 581-586 (2002) PUBMED 11792426 REFERENCE 8 (bases 1 to 849) AUTHORS Muneta Y, Shimoji Y, Inumaru S and Mori Y. TITLE Molecular cloning, characterization, and expression of porcine Fas ligand (CD95 ligand) JOURNAL J. Interferon Cytokine Res. 21 (5), 305-312 (2001) PUBMED 11429161 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB027297.1. ##Evidence-Data-START## Transcript exon combination :: AB027297.1, AF397407.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01893940, SAMN01915393 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..849 /organism="Sus scrofa" /mol_type="mRNA" /db_xref="taxon:9823" /chromosome="9" /map="9" gene 1..849 /gene="FASLG" /gene_synonym="CD95-L; FASL; TNFSF6" /note="Fas ligand (TNF superfamily, member 6)" /db_xref="GeneID:396726" CDS 1..849 /gene="FASLG" /gene_synonym="CD95-L; FASL; TNFSF6" /note="CD95 ligand; tumor necrosis factor (ligand) superfamily, member 6; fas antigen ligand" /codon_start=1 /product="tumor necrosis factor ligand superfamily member 6" /protein_id="NP_998971.1" /db_xref="GeneID:396726" /translation="MQQPFNYPYPQIFWVDSSATSPWASPGSVFPCPASVPGRPGQRR PPPPPPPPPPPPTLLPSRPLPPLPPPSLKKKRDHNAGLCLLVMFFMVLVALVGLGLGM FQLFHLQKELTELRESASQRHTESSLEKQIGHPNLPSEKKELRKVAHLTGKPNSRSIP LEWEDTYGIALVSGVKYMKGSLVINDTGLYFVYSKVYFRGQYCNNQPLSHKVYTRNSR YPQDLVLMEGKMMNYCTTGQMWARSSYLGAVFNLTSADHLYVNVSELSLVNFEESKTF FGLYKL" mat_peptide 1..390 /gene="FASLG" /gene_synonym="CD95-L; FASL; TNFSF6" /product="ADAM10-processed FasL form. {ECO:0000250}" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q9BEA8.1)" mat_peptide 1..249 /gene="FASLG" /gene_synonym="CD95-L; FASL; TNFSF6" /product="FasL intracellular domain. {ECO:0000250}" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q9BEA8.1)" misc_feature 244..249 /gene="FASLG" /gene_synonym="CD95-L; FASL; TNFSF6" /experiment="experimental evidence, no additional details recorded" /note="Cleavage, by SPPL2A. {ECO:0000250}; propagated from UniProtKB/Swiss-Prot (Q9BEA8.1); cleavage site" misc_feature 247..309 /gene="FASLG" /gene_synonym="CD95-L; FASL; TNFSF6" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q9BEA8.1); transmembrane region" misc_feature 388..393 /gene="FASLG" /gene_synonym="CD95-L; FASL; TNFSF6" /experiment="experimental evidence, no additional details recorded" /note="Cleavage, by ADAM10. {ECO:0000250}; propagated from UniProtKB/Swiss-Prot (Q9BEA8.1); cleavage site" mat_peptide 391..846 /gene="FASLG" /gene_synonym="CD95-L; FASL; TNFSF6" /product="Tumor necrosis factor ligand superfamily member 6, soluble form. {ECO:0000250}" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q9BEA8.1)" misc_feature 553..555 /gene="FASLG" /gene_synonym="CD95-L; FASL; TNFSF6" /experiment="experimental evidence, no additional details recorded" /note="N-linked (GlcNAc...) asparagine. {ECO:0000255}; propagated from UniProtKB/Swiss-Prot (Q9BEA8.1); glycosylation site" misc_feature 751..753 /gene="FASLG" /gene_synonym="CD95-L; FASL; TNFSF6" /experiment="experimental evidence, no additional details recorded" /note="N-linked (GlcNAc...) asparagine. {ECO:0000255}; propagated from UniProtKB/Swiss-Prot (Q9BEA8.1); glycosylation site" misc_feature 781..783 /gene="FASLG" /gene_synonym="CD95-L; FASL; TNFSF6" /experiment="experimental evidence, no additional details recorded" /note="N-linked (GlcNAc...) asparagine. {ECO:0000255}; propagated from UniProtKB/Swiss-Prot (Q9BEA8.1); glycosylation site" exon 1..351 /gene="FASLG" /gene_synonym="CD95-L; FASL; TNFSF6" /inference="alignment:Splign:2.1.0" exon 352..397 /gene="FASLG" /gene_synonym="CD95-L; FASL; TNFSF6" /inference="alignment:Splign:2.1.0" exon 398..454 /gene="FASLG" /gene_synonym="CD95-L; FASL; TNFSF6" /inference="alignment:Splign:2.1.0" exon 455..849 /gene="FASLG" /gene_synonym="CD95-L; FASL; TNFSF6" /inference="alignment:Splign:2.1.0" ORIGIN 1 atgcagcagc ccttcaatta cccatacccc caaatcttct gggtggacag cagtgctacc 61 tctccctggg cctccccagg ctcagtcttc ccctgtccag cttctgtgcc aggaaggcca 121 gggcaaagga ggccaccacc accaccgccg ccaccgccac caccaccaac actcctgcca 181 tcaagaccgc tgcctccact gccaccgcca tctctgaaga agaagaggga ccacaatgca 241 ggcctgtgtc tccttgtgat gttcttcatg gttctggtgg ccctggttgg attggggctg 301 gggatgtttc agctcttcca cctacagaag gagctgactg aactcagaga gtctgccagc 361 caaaggcata cagaatcatc tttggagaag caaataggtc accccaatct accctctgag 421 aaaaaggagc tgagaaaagt ggcccactta acaggcaagc ctaactcaag atccatccct 481 ctggaatggg aagacaccta tggaattgcc ttggtctctg gggtgaagta tatgaagggc 541 agccttgtga tcaatgacac tgggctgtat tttgtgtatt ccaaagtgta cttccggggt 601 cagtactgca acaaccagcc cctgagtcac aaggtataca caaggaactc taggtatccc 661 caggacctgg tgctgatgga gggaaagatg atgaactatt gcactactgg ccaaatgtgg 721 gcccgcagca gctacctggg ggctgtgttc aatctcacca gcgctgacca tttatatgtc 781 aacgtatctg agctctctct ggtcaatttt gaggaatcta agacattttt tggcttatat 841 aagctctga //